No. words: 1668; after pruning: 1642


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:702)  667  0.43 0.00 0.00  BE490274Ld08P129C04P129C101F1_042.ab1        1   703 (178)  C BE490274Ld08P129C04P129C101R1_042.ab1   (84)   703     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C BE490274Ld08P129C04P129C101R1_042.ab1   787 
  112    BE490274Ld08P129C04P129C101F1_042.ab1    28 
  116  C BE490274Ld08P129C04P129C101R1_042.ab1   672 
  138    BE490274Ld08P129C04P129C101F1_042.ab1    54 
  158  C BE490274Ld08P129C04P129C101R1_042.ab1   630 
  166    BE490274Ld08P129C04P129C101F1_042.ab1    82 
  234  C BE490274Ld08P129C04P129C101R1_042.ab1   554 
  246    BE490274Ld08P129C04P129C101F1_042.ab1   162 
  258  C BE490274Ld08P129C04P129C101R1_042.ab1   530 
  262    BE490274Ld08P129C04P129C101F1_042.ab1   178 
  370  C BE490274Ld08P129C04P129C101R1_042.ab1   418 
  382    BE490274Ld08P129C04P129C101F1_042.ab1   298 
  394  C BE490274Ld08P129C04P129C101R1_042.ab1   394 
  398    BE490274Ld08P129C04P129C101F1_042.ab1   314 
  426  C BE490274Ld08P129C04P129C101R1_042.ab1   362 
  434    BE490274Ld08P129C04P129C101F1_042.ab1   350 
  454  C BE490274Ld08P129C04P129C101R1_042.ab1   334 
  458    BE490274Ld08P129C04P129C101F1_042.ab1   374 
  546  C BE490274Ld08P129C04P129C101R1_042.ab1   242 
  558    BE490274Ld08P129C04P129C101F1_042.ab1   474 
  570  C BE490274Ld08P129C04P129C101R1_042.ab1   218 
  586    BE490274Ld08P129C04P129C101F1_042.ab1   502 
  602  C BE490274Ld08P129C04P129C101R1_042.ab1   186 
  630    BE490274Ld08P129C04P129C101F1_042.ab1   546 
  638  C BE490274Ld08P129C04P129C101R1_042.ab1   150 
  650    BE490274Ld08P129C04P129C101F1_042.ab1   566 
  658  C BE490274Ld08P129C04P129C101R1_042.ab1   130 
  662    BE490274Ld08P129C04P129C101F1_042.ab1   578 
  690  C BE490274Ld08P129C04P129C101R1_042.ab1    98 
  694    BE490274Ld08P129C04P129C101F1_042.ab1   610 
Contig length: old 965, new 965

Contig length: old 965, new 965
New start: 0