No. words: 1633; after pruning: 1607


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:702)  667  0.28 0.14 0.00  BE490274Ld11P129C04P129C101F1_036.ab1        1   703 (176)  C BE490274Ld11P129C04P129C101R1_036.ab1   (50)   704     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C BE490274Ld11P129C04P129C101R1_036.ab1   754 
   54    BE490274Ld11P129C04P129C101F1_036.ab1     4 
   58  C BE490274Ld11P129C04P129C101R1_036.ab1   697 
   70    BE490274Ld11P129C04P129C101F1_036.ab1    19 
   86  C BE490274Ld11P129C04P129C101R1_036.ab1   669 
  102    BE490274Ld11P129C04P129C101F1_036.ab1    51 
  126  C BE490274Ld11P129C04P129C101R1_036.ab1   629 
  134    BE490274Ld11P129C04P129C101F1_036.ab1    83 
  138  C BE490274Ld11P129C04P129C101R1_036.ab1   617 
  142    BE490274Ld11P129C04P129C101F1_036.ab1    91 
  206  C BE490274Ld11P129C04P129C101R1_036.ab1   549 
  210    BE490274Ld11P129C04P129C101F1_036.ab1   159 
  350  C BE490274Ld11P129C04P129C101R1_036.ab1   405 
  374    BE490274Ld11P129C04P129C101F1_036.ab1   323 
  390  C BE490274Ld11P129C04P129C101R1_036.ab1   365 
  402    BE490274Ld11P129C04P129C101F1_036.ab1   351 
  418  C BE490274Ld11P129C04P129C101R1_036.ab1   337 
  430    BE490274Ld11P129C04P129C101F1_036.ab1   379 
  438  C BE490274Ld11P129C04P129C101R1_036.ab1   317 
  446    BE490274Ld11P129C04P129C101F1_036.ab1   395 
  450  C BE490274Ld11P129C04P129C101R1_036.ab1   305 
  454    BE490274Ld11P129C04P129C101F1_036.ab1   403 
  458  C BE490274Ld11P129C04P129C101R1_036.ab1   297 
  462    BE490274Ld11P129C04P129C101F1_036.ab1   411 
  466  C BE490274Ld11P129C04P129C101R1_036.ab1   289 
  506    BE490274Ld11P129C04P129C101F1_036.ab1   455 
  514  C BE490274Ld11P129C04P129C101R1_036.ab1   241 
  594    BE490274Ld11P129C04P129C101F1_036.ab1   543 
  602  C BE490274Ld11P129C04P129C101R1_036.ab1   153 
  614    BE490274Ld11P129C04P129C101F1_036.ab1   563 
  626  C BE490274Ld11P129C04P129C101R1_036.ab1   129 
  642    BE490274Ld11P129C04P129C101F1_036.ab1   591 
  658  C BE490274Ld11P129C04P129C101R1_036.ab1    97 
  666    BE490274Ld11P129C04P129C101F1_036.ab1   615 
  686  C BE490274Ld11P129C04P129C101R1_036.ab1    69 
  690    BE490274Ld11P129C04P129C101F1_036.ab1   639 
Contig length: old 930, new 930

Contig length: old 930, new 930
New start: 0