No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:493)  478  0.00 0.40 0.20  BE490304Sn29P016B05P052C051F1_040.ab1        1   494 (54)  C BE490304Sn29P016B05P052C051R1_040.ab1   (35)   495     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE490304Sn29P016B05P052C051R1_040.ab1   530 
   55    BE490304Sn29P016B05P052C051F1_040.ab1    18 
  331  C BE490304Sn29P016B05P052C051R1_040.ab1   200 
  355    BE490304Sn29P016B05P052C051F1_040.ab1   318 
  359  C BE490304Sn29P016B05P052C051R1_040.ab1   172 
  375    BE490304Sn29P016B05P052C051F1_040.ab1   338 
  379  C BE490304Sn29P016B05P052C051R1_040.ab1   152 
  383    BE490304Sn29P016B05P052C051F1_040.ab1   346 
  387  C BE490304Sn29P016B05P052C051R1_040.ab1   144 
  395    BE490304Sn29P016B05P052C051F1_040.ab1   358 
  403  C BE490304Sn29P016B05P052C051R1_040.ab1   128 
  419    BE490304Sn29P016B05P052C051F1_040.ab1   382 
  423  C BE490304Sn29P016B05P052C051R1_040.ab1   108 
  427    BE490304Sn29P016B05P052C051F1_040.ab1   390 
  435  C BE490304Sn29P016B05P052C051R1_040.ab1    96 
  439    BE490304Sn29P016B05P052C051F1_040.ab1   402 
  447  C BE490304Sn29P016B05P052C051R1_040.ab1    84 
  451    BE490304Sn29P016B05P052C051F1_040.ab1   414 
  455  C BE490304Sn29P016B05P052C051R1_040.ab1    76 
  463    BE490304Sn29P016B05P052C051F1_040.ab1   426 
  467  C BE490304Sn29P016B05P052C051R1_040.ab1    64 
  475    BE490304Sn29P016B05P052C051F1_040.ab1   438 
  479  C BE490304Sn29P016B05P052C051R1_040.ab1    52 
  495    BE490304Sn29P016B05P052C051F1_040.ab1   458 
Contig length: old 584, new 585

Contig length: old 585, new 585
New start: 0