No. words: 1091; after pruning: 1065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.8 (1,1:502)  478  0.00 0.60 0.40  BE490304Ta21P016B05P052C051F1_039.ab1        2   504 (47)  C BE490304Ta21P016B05P052C051R1_039.ab1   (36)   504     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BE490304Ta21P016B05P052C051R1_039.ab1   540 
   55    BE490304Ta21P016B05P052C051F1_039.ab1    18 
  111  C BE490304Ta21P016B05P052C051R1_039.ab1   429 
  115    BE490304Ta21P016B05P052C051F1_039.ab1    78 
  195  C BE490304Ta21P016B05P052C051R1_039.ab1   345 
  199    BE490304Ta21P016B05P052C051F1_039.ab1   162 
  287  C BE490304Ta21P016B05P052C051R1_039.ab1   253 
  291    BE490304Ta21P016B05P052C051F1_039.ab1   254 
  303  C BE490304Ta21P016B05P052C051R1_039.ab1   237 
  307    BE490304Ta21P016B05P052C051F1_039.ab1   270 
  315  C BE490304Ta21P016B05P052C051R1_039.ab1   225 
  503    BE490304Ta21P016B05P052C051F1_039.ab1   466 
  518  C BE490304Ta21P016B05P052C051R1_039.ab1    23 
  522    BE490304Ta21P016B05P052C051F1_039.ab1   485 
Contig length: old 588, new 588

Contig length: old 588, new 588
New start: 0