No. words: 1436; after pruning: 1410


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.8 (1,1:680)  661  0.00 0.15 0.00  BE490613At02P129F04P129F101F1_089.ab1        3   681 (34)  C BE490613At02P129F04P129F101R1_089.ab1   (41)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C BE490613At02P129F04P129F101R1_089.ab1   721 
  104    BE490613At02P129F04P129F101F1_089.ab1    64 
  116  C BE490613At02P129F04P129F101R1_089.ab1   606 
  540    BE490613At02P129F04P129F101F1_089.ab1   500 
  608  C BE490613At02P129F04P129F101R1_089.ab1   114 
  612    BE490613At02P129F04P129F101F1_089.ab1   572 
  648  C BE490613At02P129F04P129F101R1_089.ab1    74 
  656    BE490613At02P129F04P129F101F1_089.ab1   616 
  660  C BE490613At02P129F04P129F101R1_089.ab1    62 
  668    BE490613At02P129F04P129F101F1_089.ab1   628 
  676  C BE490613At02P129F04P129F101R1_089.ab1    46 
  684    BE490613At02P129F04P129F101F1_089.ab1   644 
Contig length: old 755, new 755

Contig length: old 755, new 755
New start: 0