No. words: 1676; after pruning: 1650


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:711)  683  0.14 0.28 0.00  BE490613Ld01P129F04P129F101F1_063.ab1        1   711 (146)  C BE490613Ld01P129F04P129F101R1_063.ab1   (106)   713     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C BE490613Ld01P129F04P129F101R1_063.ab1   819 
  164    BE490613Ld01P129F04P129F101F1_063.ab1    56 
  184  C BE490613Ld01P129F04P129F101R1_063.ab1   636 
  208    BE490613Ld01P129F04P129F101F1_063.ab1   100 
  212  C BE490613Ld01P129F04P129F101R1_063.ab1   608 
  224    BE490613Ld01P129F04P129F101F1_063.ab1   116 
  256  C BE490613Ld01P129F04P129F101R1_063.ab1   564 
  268    BE490613Ld01P129F04P129F101F1_063.ab1   160 
  344  C BE490613Ld01P129F04P129F101R1_063.ab1   476 
  356    BE490613Ld01P129F04P129F101F1_063.ab1   248 
  384  C BE490613Ld01P129F04P129F101R1_063.ab1   436 
  392    BE490613Ld01P129F04P129F101F1_063.ab1   284 
  512  C BE490613Ld01P129F04P129F101R1_063.ab1   308 
  524    BE490613Ld01P129F04P129F101F1_063.ab1   416 
  588  C BE490613Ld01P129F04P129F101R1_063.ab1   232 
  600    BE490613Ld01P129F04P129F101F1_063.ab1   492 
  640  C BE490613Ld01P129F04P129F101R1_063.ab1   180 
  672    BE490613Ld01P129F04P129F101F1_063.ab1   564 
Contig length: old 964, new 965

Contig length: old 965, new 965
New start: 0