No. words: 1722; after pruning: 1696


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:711)  690  0.00 0.14 0.00  BE490613Ld02P129F04P129F101F1_061.ab1        1   712 (140)  C BE490613Ld02P129F04P129F101R1_061.ab1   (157)   713     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C BE490613Ld02P129F04P129F101R1_061.ab1   870 
  215    BE490613Ld02P129F04P129F101F1_061.ab1    57 
  235  C BE490613Ld02P129F04P129F101R1_061.ab1   636 
  247    BE490613Ld02P129F04P129F101F1_061.ab1    89 
  251  C BE490613Ld02P129F04P129F101R1_061.ab1   620 
  267    BE490613Ld02P129F04P129F101F1_061.ab1   109 
  271  C BE490613Ld02P129F04P129F101R1_061.ab1   600 
  275    BE490613Ld02P129F04P129F101F1_061.ab1   117 
  287  C BE490613Ld02P129F04P129F101R1_061.ab1   584 
  291    BE490613Ld02P129F04P129F101F1_061.ab1   133 
  307  C BE490613Ld02P129F04P129F101R1_061.ab1   564 
  311    BE490613Ld02P129F04P129F101F1_061.ab1   153 
  315  C BE490613Ld02P129F04P129F101R1_061.ab1   556 
  323    BE490613Ld02P129F04P129F101F1_061.ab1   165 
  355  C BE490613Ld02P129F04P129F101R1_061.ab1   516 
  371    BE490613Ld02P129F04P129F101F1_061.ab1   213 
  391  C BE490613Ld02P129F04P129F101R1_061.ab1   480 
  407    BE490613Ld02P129F04P129F101F1_061.ab1   249 
  435  C BE490613Ld02P129F04P129F101R1_061.ab1   436 
  455    BE490613Ld02P129F04P129F101F1_061.ab1   297 
  535  C BE490613Ld02P129F04P129F101R1_061.ab1   336 
  539    BE490613Ld02P129F04P129F101F1_061.ab1   381 
  563  C BE490613Ld02P129F04P129F101R1_061.ab1   308 
  571    BE490613Ld02P129F04P129F101F1_061.ab1   413 
  639  C BE490613Ld02P129F04P129F101R1_061.ab1   232 
  651    BE490613Ld02P129F04P129F101F1_061.ab1   493 
  671  C BE490613Ld02P129F04P129F101R1_061.ab1   200 
  675    BE490613Ld02P129F04P129F101F1_061.ab1   517 
  687  C BE490613Ld02P129F04P129F101R1_061.ab1   184 
  723    BE490613Ld02P129F04P129F101F1_061.ab1   565 
  803  C BE490613Ld02P129F04P129F101R1_061.ab1    68 
  811    BE490613Ld02P129F04P129F101F1_061.ab1   653 
Contig length: old 1010, new 1010

Contig length: old 1010, new 1010
New start: 0