No. words: 1644; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:653)  639  0.00 0.00 0.00  BE490613Ld03P129F04P129F101F1_059.ab1        1   654 (148)  C BE490613Ld03P129F04P129F101R1_059.ab1   (188)   654     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C BE490613Ld03P129F04P129F101R1_059.ab1   842 
  232    BE490613Ld03P129F04P129F101F1_059.ab1    44 
  260  C BE490613Ld03P129F04P129F101R1_059.ab1   583 
  264    BE490613Ld03P129F04P129F101F1_059.ab1    76 
  268  C BE490613Ld03P129F04P129F101R1_059.ab1   575 
  276    BE490613Ld03P129F04P129F101F1_059.ab1    88 
  320  C BE490613Ld03P129F04P129F101R1_059.ab1   523 
  340    BE490613Ld03P129F04P129F101F1_059.ab1   152 
  408  C BE490613Ld03P129F04P129F101R1_059.ab1   435 
  424    BE490613Ld03P129F04P129F101F1_059.ab1   236 
  432  C BE490613Ld03P129F04P129F101R1_059.ab1   411 
  472    BE490613Ld03P129F04P129F101F1_059.ab1   284 
  756  C BE490613Ld03P129F04P129F101R1_059.ab1    87 
  760    BE490613Ld03P129F04P129F101F1_059.ab1   572 
Contig length: old 990, new 990

Contig length: old 990, new 990
New start: 0