No. words: 1711; after pruning: 1685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:710)  690  0.00 0.14 0.00  BE490613Ld05P129F04P129F101F1_055.ab1        1   711 (148)  C BE490613Ld05P129F04P129F101R1_055.ab1   (140)   712     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C BE490613Ld05P129F04P129F101R1_055.ab1   852 
  191    BE490613Ld05P129F04P129F101F1_055.ab1    50 
  195  C BE490613Ld05P129F04P129F101R1_055.ab1   658 
  199    BE490613Ld05P129F04P129F101F1_055.ab1    58 
  207  C BE490613Ld05P129F04P129F101R1_055.ab1   646 
  215    BE490613Ld05P129F04P129F101F1_055.ab1    74 
  231  C BE490613Ld05P129F04P129F101R1_055.ab1   622 
  259    BE490613Ld05P129F04P129F101F1_055.ab1   118 
  267  C BE490613Ld05P129F04P129F101R1_055.ab1   586 
  271    BE490613Ld05P129F04P129F101F1_055.ab1   130 
  275  C BE490613Ld05P129F04P129F101R1_055.ab1   578 
  279    BE490613Ld05P129F04P129F101F1_055.ab1   138 
  287  C BE490613Ld05P129F04P129F101R1_055.ab1   566 
  307    BE490613Ld05P129F04P129F101F1_055.ab1   166 
  331  C BE490613Ld05P129F04P129F101R1_055.ab1   522 
  359    BE490613Ld05P129F04P129F101F1_055.ab1   218 
  379  C BE490613Ld05P129F04P129F101R1_055.ab1   474 
  387    BE490613Ld05P129F04P129F101F1_055.ab1   246 
  419  C BE490613Ld05P129F04P129F101R1_055.ab1   434 
  439    BE490613Ld05P129F04P129F101F1_055.ab1   298 
  519  C BE490613Ld05P129F04P129F101R1_055.ab1   334 
  535    BE490613Ld05P129F04P129F101F1_055.ab1   394 
  579  C BE490613Ld05P129F04P129F101R1_055.ab1   274 
  583    BE490613Ld05P129F04P129F101F1_055.ab1   442 
  791  C BE490613Ld05P129F04P129F101R1_055.ab1    62 
  799    BE490613Ld05P129F04P129F101F1_055.ab1   658 
Contig length: old 1000, new 1000

Contig length: old 1000, new 1000
New start: 0