No. words: 1719; after pruning: 1679


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:711)  687  0.14 0.14 0.00  BE490613Ld06P129F04P129F101F1_053.ab1        1   712 (138)  C BE490613Ld06P129F04P129F101R1_053.ab1   (156)   713     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C BE490613Ld06P129F04P129F101R1_053.ab1   869 
  204    BE490613Ld06P129F04P129F101F1_053.ab1    47 
  208  C BE490613Ld06P129F04P129F101R1_053.ab1   662 
  216    BE490613Ld06P129F04P129F101F1_053.ab1    59 
  224  C BE490613Ld06P129F04P129F101R1_053.ab1   646 
  228    BE490613Ld06P129F04P129F101F1_053.ab1    71 
  236  C BE490613Ld06P129F04P129F101R1_053.ab1   634 
  244    BE490613Ld06P129F04P129F101F1_053.ab1    87 
  252  C BE490613Ld06P129F04P129F101R1_053.ab1   618 
  280    BE490613Ld06P129F04P129F101F1_053.ab1   123 
  284  C BE490613Ld06P129F04P129F101R1_053.ab1   586 
  288    BE490613Ld06P129F04P129F101F1_053.ab1   131 
  312  C BE490613Ld06P129F04P129F101R1_053.ab1   558 
  320    BE490613Ld06P129F04P129F101F1_053.ab1   163 
  324  C BE490613Ld06P129F04P129F101R1_053.ab1   546 
  328    BE490613Ld06P129F04P129F101F1_053.ab1   171 
  344  C BE490613Ld06P129F04P129F101R1_053.ab1   526 
  360    BE490613Ld06P129F04P129F101F1_053.ab1   203 
  384  C BE490613Ld06P129F04P129F101R1_053.ab1   486 
  408    BE490613Ld06P129F04P129F101F1_053.ab1   251 
  420  C BE490613Ld06P129F04P129F101R1_053.ab1   450 
  424    BE490613Ld06P129F04P129F101F1_053.ab1   267 
  432  C BE490613Ld06P129F04P129F101R1_053.ab1   438 
  456    BE490613Ld06P129F04P129F101F1_053.ab1   299 
  464  C BE490613Ld06P129F04P129F101R1_053.ab1   406 
  492    BE490613Ld06P129F04P129F101F1_053.ab1   335 
  512  C BE490613Ld06P129F04P129F101R1_053.ab1   358 
  560    BE490613Ld06P129F04P129F101F1_053.ab1   403 
  568  C BE490613Ld06P129F04P129F101R1_053.ab1   302 
  600    BE490613Ld06P129F04P129F101F1_053.ab1   443 
  604  C BE490613Ld06P129F04P129F101R1_053.ab1   266 
  624    BE490613Ld06P129F04P129F101F1_053.ab1   467 
  632  C BE490613Ld06P129F04P129F101R1_053.ab1   238 
  648    BE490613Ld06P129F04P129F101F1_053.ab1   491 
  652  C BE490613Ld06P129F04P129F101R1_053.ab1   218 
  668    BE490613Ld06P129F04P129F101F1_053.ab1   511 
  676  C BE490613Ld06P129F04P129F101R1_053.ab1   194 
  756    BE490613Ld06P129F04P129F101F1_053.ab1   599 
  804  C BE490613Ld06P129F04P129F101R1_053.ab1    66 
  808    BE490613Ld06P129F04P129F101F1_053.ab1   651 
Contig length: old 1007, new 1007

Contig length: old 1007, new 1007
New start: 0 
S Change at: 929; seg lengths: entry 1, contig 1