No. words: 1702; after pruning: 1676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:697)  678  0.14 0.00 0.00  BE490613Ld07P129F04P129F101F1_051.ab1        1   698 (146)  C BE490613Ld07P129F04P129F101R1_051.ab1   (160)   698     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C BE490613Ld07P129F04P129F101R1_051.ab1   858 
  193    BE490613Ld07P129F04P129F101F1_051.ab1    33 
  197  C BE490613Ld07P129F04P129F101R1_051.ab1   662 
  201    BE490613Ld07P129F04P129F101F1_051.ab1    41 
  241  C BE490613Ld07P129F04P129F101R1_051.ab1   618 
  265    BE490613Ld07P129F04P129F101F1_051.ab1   105 
  377  C BE490613Ld07P129F04P129F101R1_051.ab1   482 
  393    BE490613Ld07P129F04P129F101F1_051.ab1   233 
  425  C BE490613Ld07P129F04P129F101R1_051.ab1   434 
  445    BE490613Ld07P129F04P129F101F1_051.ab1   285 
  505  C BE490613Ld07P129F04P129F101R1_051.ab1   354 
  517    BE490613Ld07P129F04P129F101F1_051.ab1   357 
  525  C BE490613Ld07P129F04P129F101R1_051.ab1   334 
  529    BE490613Ld07P129F04P129F101F1_051.ab1   369 
  625  C BE490613Ld07P129F04P129F101R1_051.ab1   234 
  637    BE490613Ld07P129F04P129F101F1_051.ab1   477 
  721  C BE490613Ld07P129F04P129F101R1_051.ab1   138 
  729    BE490613Ld07P129F04P129F101F1_051.ab1   569 
  733  C BE490613Ld07P129F04P129F101R1_051.ab1   126 
  753    BE490613Ld07P129F04P129F101F1_051.ab1   593 
  765  C BE490613Ld07P129F04P129F101R1_051.ab1    94 
  773    BE490613Ld07P129F04P129F101F1_051.ab1   613 
  793  C BE490613Ld07P129F04P129F101R1_051.ab1    66 
  797    BE490613Ld07P129F04P129F101F1_051.ab1   637 
Contig length: old 1004, new 1004

Contig length: old 1004, new 1004
New start: 0