No. words: 1688; after pruning: 1662


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:685)  662  0.15 0.15 0.00  BE490613Ld08P129F04P129F101F1_049.ab1        1   686 (136)  C BE490613Ld08P129F04P129F101R1_049.ab1   (179)   687     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C BE490613Ld08P129F04P129F101R1_049.ab1   866 
  224    BE490613Ld08P129F04P129F101F1_049.ab1    44 
  244  C BE490613Ld08P129F04P129F101R1_049.ab1   623 
  248    BE490613Ld08P129F04P129F101F1_049.ab1    68 
  256  C BE490613Ld08P129F04P129F101R1_049.ab1   611 
  272    BE490613Ld08P129F04P129F101F1_049.ab1    92 
  292  C BE490613Ld08P129F04P129F101R1_049.ab1   575 
  296    BE490613Ld08P129F04P129F101F1_049.ab1   116 
  300  C BE490613Ld08P129F04P129F101R1_049.ab1   567 
  332    BE490613Ld08P129F04P129F101F1_049.ab1   152 
  356  C BE490613Ld08P129F04P129F101R1_049.ab1   511 
  368    BE490613Ld08P129F04P129F101F1_049.ab1   188 
  400  C BE490613Ld08P129F04P129F101R1_049.ab1   467 
  412    BE490613Ld08P129F04P129F101F1_049.ab1   232 
  444  C BE490613Ld08P129F04P129F101R1_049.ab1   423 
  464    BE490613Ld08P129F04P129F101F1_049.ab1   284 
  484  C BE490613Ld08P129F04P129F101R1_049.ab1   383 
  488    BE490613Ld08P129F04P129F101F1_049.ab1   308 
  520  C BE490613Ld08P129F04P129F101R1_049.ab1   347 
  568    BE490613Ld08P129F04P129F101F1_049.ab1   388 
  588  C BE490613Ld08P129F04P129F101R1_049.ab1   279 
  596    BE490613Ld08P129F04P129F101F1_049.ab1   416 
  648  C BE490613Ld08P129F04P129F101R1_049.ab1   219 
  656    BE490613Ld08P129F04P129F101F1_049.ab1   476 
  668  C BE490613Ld08P129F04P129F101R1_049.ab1   199 
  672    BE490613Ld08P129F04P129F101F1_049.ab1   492 
  708  C BE490613Ld08P129F04P129F101R1_049.ab1   159 
  720    BE490613Ld08P129F04P129F101F1_049.ab1   540 
  752  C BE490613Ld08P129F04P129F101R1_049.ab1   115 
  756    BE490613Ld08P129F04P129F101F1_049.ab1   576 
  796  C BE490613Ld08P129F04P129F101R1_049.ab1    71 
  812    BE490613Ld08P129F04P129F101F1_049.ab1   632 
Contig length: old 1002, new 1002

Contig length: old 1002, new 1002
New start: 0