No. words: 1670; after pruning: 1644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:714)  691  0.14 0.14 0.00  BE490613Ld10P129F04P129F101F1_062.ab1        1   715 (143)  C BE490613Ld10P129F04P129F101R1_062.ab1   (96)   716     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C BE490613Ld10P129F04P129F101R1_062.ab1   812 
  146    BE490613Ld10P129F04P129F101F1_062.ab1    49 
  150  C BE490613Ld10P129F04P129F101R1_062.ab1   663 
  162    BE490613Ld10P129F04P129F101F1_062.ab1    65 
  178  C BE490613Ld10P129F04P129F101R1_062.ab1   635 
  222    BE490613Ld10P129F04P129F101F1_062.ab1   125 
  238  C BE490613Ld10P129F04P129F101R1_062.ab1   575 
  242    BE490613Ld10P129F04P129F101F1_062.ab1   145 
  374  C BE490613Ld10P129F04P129F101R1_062.ab1   439 
  382    BE490613Ld10P129F04P129F101F1_062.ab1   285 
  502  C BE490613Ld10P129F04P129F101R1_062.ab1   311 
  514    BE490613Ld10P129F04P129F101F1_062.ab1   417 
  578  C BE490613Ld10P129F04P129F101R1_062.ab1   235 
  586    BE490613Ld10P129F04P129F101F1_062.ab1   489 
  630  C BE490613Ld10P129F04P129F101R1_062.ab1   183 
  642    BE490613Ld10P129F04P129F101F1_062.ab1   545 
  686  C BE490613Ld10P129F04P129F101R1_062.ab1   127 
  694    BE490613Ld10P129F04P129F101F1_062.ab1   597 
  742  C BE490613Ld10P129F04P129F101R1_062.ab1    71 
  750    BE490613Ld10P129F04P129F101F1_062.ab1   653 
Contig length: old 955, new 955

Contig length: old 955, new 955
New start: 0