No. words: 883; after pruning: 857


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -3.2 -3.2 (1,1:317)  146 12.29 0.00 0.00  BE490613Ld12P129F04P129F101F1_058.ab1       83   318 (326)  C BE490613Ld12P129F04P129F101R1_058.ab1   (3)   236     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.1 (<20 part: -7.1 (#=29), >20:0.0 (#=0); in HQ: -7.1, out HQ 0.0), match: 4.6  lead: -0.8  total: -3.3  146 12.29 0.00 0.00  BE490613Ld12P129F04P129F101F1_058.ab1       83   318 (326)  C BE490613Ld12P129F04P129F101R1_058.ab1   (3)   236     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  54 nodes

 29 str. conn. components

Path
    1    BE490613Ld12P129F04P129F101F1_058.ab1     1 
Contig length: old 644, new 644

Contig length: old 644, new 644
New start: 0