No. words: 1038; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.6 (1,1:471)  452  0.00 0.21 0.00  BE490613Sn25P146A08P129F101F1_023.ab1        5   472 (47)  C BE490613Sn25P146A08P129F101R1_023.ab1   (50)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C BE490613Sn25P146A08P129F101R1_023.ab1   519 
   95    BE490613Sn25P146A08P129F101F1_023.ab1    48 
   99  C BE490613Sn25P146A08P129F101R1_023.ab1   421 
  111    BE490613Sn25P146A08P129F101F1_023.ab1    64 
  119  C BE490613Sn25P146A08P129F101R1_023.ab1   401 
  143    BE490613Sn25P146A08P129F101F1_023.ab1    96 
  159  C BE490613Sn25P146A08P129F101R1_023.ab1   361 
  179    BE490613Sn25P146A08P129F101F1_023.ab1   132 
Contig length: old 566, new 566

Contig length: old 566, new 566
New start: 0