No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:485)  461  0.00 0.21 0.41  BE490613Sn29P129F04P146C081F1_019.ab1        1   487 (41)  C BE490613Sn29P129F04P146C081R1_019.ab1   (41)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BE490613Sn29P129F04P146C081R1_019.ab1   527 
  292    BE490613Sn29P129F04P146C081F1_019.ab1   250 
  296  C BE490613Sn29P129F04P146C081R1_019.ab1   232 
  308    BE490613Sn29P129F04P146C081F1_019.ab1   266 
  320  C BE490613Sn29P129F04P146C081R1_019.ab1   208 
  328    BE490613Sn29P129F04P146C081F1_019.ab1   286 
  408  C BE490613Sn29P129F04P146C081R1_019.ab1   120 
  420    BE490613Sn29P129F04P146C081F1_019.ab1   378 
Contig length: old 569, new 570

Contig length: old 570, new 570
New start: 0