No. words: 1498; after pruning: 1472


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:701)  680  0.00 0.14 0.00  BE490613Tu01P129F04P129F101F1_068.ab1        1   702 (52)  C BE490613Tu01P129F04P129F101R1_068.ab1   (41)   703     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C BE490613Tu01P129F04P129F101R1_068.ab1   744 
   87    BE490613Tu01P129F04P129F101F1_068.ab1    45 
   91  C BE490613Tu01P129F04P129F101R1_068.ab1   654 
   99    BE490613Tu01P129F04P129F101F1_068.ab1    57 
  139  C BE490613Tu01P129F04P129F101R1_068.ab1   606 
  155    BE490613Tu01P129F04P129F101F1_068.ab1   113 
  187  C BE490613Tu01P129F04P129F101R1_068.ab1   558 
  207    BE490613Tu01P129F04P129F101F1_068.ab1   165 
  279  C BE490613Tu01P129F04P129F101R1_068.ab1   466 
  291    BE490613Tu01P129F04P129F101F1_068.ab1   249 
  299  C BE490613Tu01P129F04P129F101R1_068.ab1   446 
  307    BE490613Tu01P129F04P129F101F1_068.ab1   265 
  399  C BE490613Tu01P129F04P129F101R1_068.ab1   346 
  435    BE490613Tu01P129F04P129F101F1_068.ab1   393 
  615  C BE490613Tu01P129F04P129F101R1_068.ab1   130 
  651    BE490613Tu01P129F04P129F101F1_068.ab1   609 
  663  C BE490613Tu01P129F04P129F101R1_068.ab1    82 
  667    BE490613Tu01P129F04P129F101F1_068.ab1   625 
  675  C BE490613Tu01P129F04P129F101R1_068.ab1    70 
  679    BE490613Tu01P129F04P129F101F1_068.ab1   637 
  687  C BE490613Tu01P129F04P129F101R1_068.ab1    58 
  703    BE490613Tu01P129F04P129F101F1_068.ab1   661 
  707  C BE490613Tu01P129F04P129F101R1_068.ab1    38 
  727    BE490613Tu01P129F04P129F101F1_068.ab1   685 
  731  C BE490613Tu01P129F04P129F101R1_068.ab1    14 
  739    BE490613Tu01P129F04P129F101F1_068.ab1   697 
Contig length: old 796, new 796

Contig length: old 796, new 796
New start: 0