No. words: 1662; after pruning: 1622


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:1261)  392  0.25 0.00 0.00  BE490651Sn29P003C06P052D051F1_086.ab1      389   788 (0)  C BE490651Sn29P003C06P052D051R1_086.ab1   (0)   874   475 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    BE490651Sn29P003C06P052D051F1_086.ab1     1 
  456  C BE490651Sn29P003C06P052D051R1_086.ab1   807 
  460    BE490651Sn29P003C06P052D051F1_086.ab1   460 
  561  C BE490651Sn29P003C06P052D051R1_086.ab1   702 
  565    BE490651Sn29P003C06P052D051F1_086.ab1   565 
  581  C BE490651Sn29P003C06P052D051R1_086.ab1   682 
  681    BE490651Sn29P003C06P052D051F1_086.ab1   681 
  685  C BE490651Sn29P003C06P052D051R1_086.ab1   578 
Contig length: old 1262, new 1262

Contig length: old 1262, new 1262
New start: 0