No. words: 1034; after pruning: 980


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.0 (1,1:431)  384  1.39 0.46 0.93  BE490662Ld01P067A03P067A091F1_074.ab1        1   431 (68)  C BE490662Ld01P067A03P067A091R1_074.ab1   (103)   432     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C BE490662Ld01P067A03P067A091R1_074.ab1   535 
  111    BE490662Ld01P067A03P067A091F1_074.ab1     8 
  120  C BE490662Ld01P067A03P067A091R1_074.ab1   416 
  128    BE490662Ld01P067A03P067A091F1_074.ab1    25 
  144  C BE490662Ld01P067A03P067A091R1_074.ab1   392 
  152    BE490662Ld01P067A03P067A091F1_074.ab1    49 
  168  C BE490662Ld01P067A03P067A091R1_074.ab1   368 
  176    BE490662Ld01P067A03P067A091F1_074.ab1    73 
  184  C BE490662Ld01P067A03P067A091R1_074.ab1   352 
  316    BE490662Ld01P067A03P067A091F1_074.ab1   213 
  344  C BE490662Ld01P067A03P067A091R1_074.ab1   192 
  433    BE490662Ld01P067A03P067A091F1_074.ab1   330 
  437  C BE490662Ld01P067A03P067A091R1_074.ab1    99 
  512    BE490662Ld01P067A03P067A091F1_074.ab1   410 
  525  C BE490662Ld01P067A03P067A091R1_074.ab1    12 
  529    BE490662Ld01P067A03P067A091F1_074.ab1   427 
Contig length: old 602, new 601

Contig length: old 601, new 601
New start: 0 
S Change at: 60; seg lengths: entry 1, contig 1