No. words: 1155; after pruning: 1129


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:444)  420  0.45 0.00 0.67  BE490662Ld09P067A03P067A091F1_089.ab1        1   446 (114)  C BE490662Ld09P067A03P067A091R1_089.ab1   (151)   444     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE490662Ld09P067A03P067A091R1_089.ab1   595 
  163    BE490662Ld09P067A03P067A091F1_089.ab1    12 
  167  C BE490662Ld09P067A03P067A091R1_089.ab1   429 
  214    BE490662Ld09P067A03P067A091F1_089.ab1    63 
  218  C BE490662Ld09P067A03P067A091R1_089.ab1   378 
  226    BE490662Ld09P067A03P067A091F1_089.ab1    75 
  234  C BE490662Ld09P067A03P067A091R1_089.ab1   362 
  254    BE490662Ld09P067A03P067A091F1_089.ab1   103 
  258  C BE490662Ld09P067A03P067A091R1_089.ab1   338 
  266    BE490662Ld09P067A03P067A091F1_089.ab1   115 
  286  C BE490662Ld09P067A03P067A091R1_089.ab1   310 
  290    BE490662Ld09P067A03P067A091F1_089.ab1   139 
  350  C BE490662Ld09P067A03P067A091R1_089.ab1   246 
  362    BE490662Ld09P067A03P067A091F1_089.ab1   211 
  390  C BE490662Ld09P067A03P067A091R1_089.ab1   206 
  398    BE490662Ld09P067A03P067A091F1_089.ab1   247 
  402  C BE490662Ld09P067A03P067A091R1_089.ab1   194 
  418    BE490662Ld09P067A03P067A091F1_089.ab1   267 
  502  C BE490662Ld09P067A03P067A091R1_089.ab1    94 
  530    BE490662Ld09P067A03P067A091F1_089.ab1   379 
  534  C BE490662Ld09P067A03P067A091R1_089.ab1    62 
  550    BE490662Ld09P067A03P067A091F1_089.ab1   399 
  554  C BE490662Ld09P067A03P067A091R1_089.ab1    42 
  562    BE490662Ld09P067A03P067A091F1_089.ab1   411 
  573  C BE490662Ld09P067A03P067A091R1_089.ab1    24 
  585    BE490662Ld09P067A03P067A091F1_089.ab1   435 
Contig length: old 710, new 710

Contig length: old 710, new 711
New start: 0 
I Change at: 584; seg lengths: entry 1, contig 0