No. words: 1251; after pruning: 1225


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.9 (1,1:473)  451  0.00 0.00 0.00  BE490744Ld01P067F02P067F081F1_057.ab1        3   474 (157)  C BE490744Ld01P067F02P067F081R1_057.ab1   (148)   472     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BE490744Ld01P067F02P067F081R1_057.ab1   620 
  156    BE490744Ld01P067F02P067F081F1_057.ab1    10 
  164  C BE490744Ld01P067F02P067F081R1_057.ab1   457 
  176    BE490744Ld01P067F02P067F081F1_057.ab1    30 
  212  C BE490744Ld01P067F02P067F081R1_057.ab1   409 
  216    BE490744Ld01P067F02P067F081F1_057.ab1    70 
  284  C BE490744Ld01P067F02P067F081R1_057.ab1   337 
  288    BE490744Ld01P067F02P067F081F1_057.ab1   142 
  304  C BE490744Ld01P067F02P067F081R1_057.ab1   317 
  312    BE490744Ld01P067F02P067F081F1_057.ab1   166 
  324  C BE490744Ld01P067F02P067F081R1_057.ab1   297 
  396    BE490744Ld01P067F02P067F081F1_057.ab1   250 
  452  C BE490744Ld01P067F02P067F081R1_057.ab1   169 
  488    BE490744Ld01P067F02P067F081F1_057.ab1   342 
  500  C BE490744Ld01P067F02P067F081R1_057.ab1   121 
  504    BE490744Ld01P067F02P067F081F1_057.ab1   358 
  520  C BE490744Ld01P067F02P067F081R1_057.ab1   101 
  524    BE490744Ld01P067F02P067F081F1_057.ab1   378 
  540  C BE490744Ld01P067F02P067F081R1_057.ab1    81 
  560    BE490744Ld01P067F02P067F081F1_057.ab1   414 
  568  C BE490744Ld01P067F02P067F081R1_057.ab1    53 
  584    BE490744Ld01P067F02P067F081F1_057.ab1   438 
  588  C BE490744Ld01P067F02P067F081R1_057.ab1    33 
  596    BE490744Ld01P067F02P067F081F1_057.ab1   450 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0