No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:493)  393  0.68 0.46 0.46  BE490744Ld10P067F02P067F081F1_056.ab1        1   439 (0)  C BE490744Ld10P067F02P067F081R1_056.ab1   (82)   494    56 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE490744Ld10P067F02P067F081R1_056.ab1   576 
   86    BE490744Ld10P067F02P067F081F1_056.ab1     4 
   90  C BE490744Ld10P067F02P067F081R1_056.ab1   487 
   94    BE490744Ld10P067F02P067F081F1_056.ab1    12 
  162  C BE490744Ld10P067F02P067F081R1_056.ab1   415 
  170    BE490744Ld10P067F02P067F081F1_056.ab1    88 
  202  C BE490744Ld10P067F02P067F081R1_056.ab1   375 
  218    BE490744Ld10P067F02P067F081F1_056.ab1   136 
  238  C BE490744Ld10P067F02P067F081R1_056.ab1   339 
  246    BE490744Ld10P067F02P067F081F1_056.ab1   164 
  262  C BE490744Ld10P067F02P067F081R1_056.ab1   315 
Contig length: old 576, new 576

Contig length: old 576, new 576
New start: 0