No. words: 824; after pruning: 798


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -2.3 -2.3 (1,1:161)  113  9.94 0.00 0.00  BE490765Ld03P016D05P016D111F1_055.ab1        1   161 (135)  C BE490765Ld03P016D05P016D111R1_055.ab1   (366)   162     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.3       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  40 nodes

 22 str. conn. components

Path
    1  C BE490765Ld03P016D05P016D111R1_055.ab1   528 
  511    BE490765Ld03P016D05P016D111F1_055.ab1   145 
Contig length: old 662, new 662

Contig length: old 662, new 662
New start: 0 
S Change at: 515; seg lengths: entry 7, contig 7