No. words: 703; after pruning: 677


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -2.2 -2.2 (1,1:99)   62  8.42 2.11 0.00  BE490765Ld05P016D05P016D111F1_051.ab1        4    98 (122)  C BE490765Ld05P016D05P016D111R1_051.ab1   (386)    97     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.2       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  22 nodes

 13 str. conn. components

Path
    1  C BE490765Ld05P016D05P016D111R1_051.ab1   483 
  458    BE490765Ld05P016D05P016D111F1_051.ab1    75 
Contig length: old 603, new 603

Contig length: old 603, new 605
New start: 0 
S Change at: 465; seg lengths: entry 1, contig 1
I Change at: 474; seg lengths: entry 2, contig 0