No. words: 712; after pruning: 686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   10   -3.6 -3.6 (1,1:109)   62  8.42 2.11 0.00  BE490765Ld07P016D05P016D111F1_095.ab1        4    98 (121)  C BE490765Ld07P016D05P016D111R1_095.ab1   (386)   107    11 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.6 (<20 part: -4.6 (#=10), >20:0.0 (#=0); in HQ: -4.6, out HQ 0.0), match: 1.9  trail: -0.5  lead: -0.5  total: -3.7   62  8.42 2.11 0.00  BE490765Ld07P016D05P016D111F1_095.ab1        4    98 (121)  C BE490765Ld07P016D05P016D111R1_095.ab1   (386)   107    11 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.6       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  24 nodes

 14 str. conn. components

Path
    1  C BE490765Ld07P016D05P016D111R1_095.ab1   493 
  461    BE490765Ld07P016D05P016D111F1_095.ab1    78 
Contig length: old 602, new 602

Contig length: old 602, new 604
New start: 0 
S Change at: 465; seg lengths: entry 1, contig 1
I Change at: 474; seg lengths: entry 2, contig 0