No. words: 1241; after pruning: 1215


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.8 (1,1:958)  273  0.35 0.00 0.00  BE494474As01P078F02P078F081F1_018.ab1      349   630 (0)  C BE494474As01P078F02P078F081R1_018.ab1   (0)   611   330 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1    BE494474As01P078F02P078F081F1_018.ab1     1 
  396  C BE494474As01P078F02P078F081R1_018.ab1   564 
  412    BE494474As01P078F02P078F081F1_018.ab1   412 
  416  C BE494474As01P078F02P078F081R1_018.ab1   544 
  464    BE494474As01P078F02P078F081F1_018.ab1   464 
  476  C BE494474As01P078F02P078F081R1_018.ab1   484 
Contig length: old 959, new 959

Contig length: old 959, new 959
New start: 0