No. words: 1375; after pruning: 1321


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:934)  430  0.45 0.00 0.00  BE494474At01P078F02P078F081F1_045.ab1      280   719 (0)  C BE494474At01P078F02P078F081R1_045.ab1   (0)   656   217 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    BE494474At01P078F02P078F081F1_045.ab1     1 
  413  C BE494474At01P078F02P078F081R1_045.ab1   523 
  429    BE494474At01P078F02P078F081F1_045.ab1   429 
  433  C BE494474At01P078F02P078F081R1_045.ab1   503 
  441    BE494474At01P078F02P078F081F1_045.ab1   441 
  457  C BE494474At01P078F02P078F081R1_045.ab1   479 
  461    BE494474At01P078F02P078F081F1_045.ab1   461 
  473  C BE494474At01P078F02P078F081R1_045.ab1   463 
  481    BE494474At01P078F02P078F081F1_045.ab1   481 
  485  C BE494474At01P078F02P078F081R1_045.ab1   451 
  493    BE494474At01P078F02P078F081F1_045.ab1   493 
  501  C BE494474At01P078F02P078F081R1_045.ab1   435 
  517    BE494474At01P078F02P078F081F1_045.ab1   517 
  521  C BE494474At01P078F02P078F081R1_045.ab1   415 
  529    BE494474At01P078F02P078F081F1_045.ab1   529 
  533  C BE494474At01P078F02P078F081R1_045.ab1   403 
  552    BE494474At01P078F02P078F081F1_045.ab1   552 
  556  C BE494474At01P078F02P078F081R1_045.ab1   380 
Contig length: old 935, new 935

Contig length: old 935, new 935
New start: 0