No. words: 1351; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:943)  395  0.49 0.00 0.00  BE494474At02P078F02P078F081F1_043.ab1      283   689 (0)  C BE494474At02P078F02P078F081R1_043.ab1   (0)   662   256 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1    BE494474At02P078F02P078F081F1_043.ab1     1 
  366  C BE494474At02P078F02P078F081R1_043.ab1   579 
  370    BE494474At02P078F02P078F081F1_043.ab1   370 
  406  C BE494474At02P078F02P078F081R1_043.ab1   539 
  414    BE494474At02P078F02P078F081F1_043.ab1   414 
  418  C BE494474At02P078F02P078F081R1_043.ab1   527 
  438    BE494474At02P078F02P078F081F1_043.ab1   438 
  442  C BE494474At02P078F02P078F081R1_043.ab1   503 
  450    BE494474At02P078F02P078F081F1_043.ab1   450 
  458  C BE494474At02P078F02P078F081R1_043.ab1   487 
  470    BE494474At02P078F02P078F081F1_043.ab1   470 
  478  C BE494474At02P078F02P078F081R1_043.ab1   467 
  490    BE494474At02P078F02P078F081F1_043.ab1   490 
  494  C BE494474At02P078F02P078F081R1_043.ab1   451 
  502    BE494474At02P078F02P078F081F1_043.ab1   502 
  514  C BE494474At02P078F02P078F081R1_043.ab1   431 
  554    BE494474At02P078F02P078F081F1_043.ab1   554 
  558  C BE494474At02P078F02P078F081R1_043.ab1   387 
Contig length: old 944, new 944

Contig length: old 944, new 944
New start: 0