No. words: 1724; after pruning: 1698


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:984)  723  0.00 0.00 0.00  BE494474Ld06P078F02P078F081F1_070.ab1       80   818 (0)  C BE494474Ld06P078F02P078F081R1_070.ab1   (0)   906   168 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    BE494474Ld06P078F02P078F081F1_070.ab1     1 
  255  C BE494474Ld06P078F02P078F081R1_070.ab1   731 
  259    BE494474Ld06P078F02P078F081F1_070.ab1   259 
  283  C BE494474Ld06P078F02P078F081R1_070.ab1   703 
  287    BE494474Ld06P078F02P078F081F1_070.ab1   287 
  291  C BE494474Ld06P078F02P078F081R1_070.ab1   695 
  331    BE494474Ld06P078F02P078F081F1_070.ab1   331 
  335  C BE494474Ld06P078F02P078F081R1_070.ab1   651 
  351    BE494474Ld06P078F02P078F081F1_070.ab1   351 
  355  C BE494474Ld06P078F02P078F081R1_070.ab1   631 
Contig length: old 985, new 985

Contig length: old 985, new 985
New start: 0