No. words: 1610; after pruning: 1584


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:966)  627  0.00 0.00 0.00  BE494474Ld07P078F02P078F081F1_068.ab1       81   723 (0)  C BE494474Ld07P078F02P078F081R1_068.ab1   (0)   887   245 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1    BE494474Ld07P078F02P078F081F1_068.ab1     1 
  188  C BE494474Ld07P078F02P078F081R1_068.ab1   780 
  192    BE494474Ld07P078F02P078F081F1_068.ab1   192 
  204  C BE494474Ld07P078F02P078F081R1_068.ab1   764 
  208    BE494474Ld07P078F02P078F081F1_068.ab1   208 
  240  C BE494474Ld07P078F02P078F081R1_068.ab1   728 
  244    BE494474Ld07P078F02P078F081F1_068.ab1   244 
  260  C BE494474Ld07P078F02P078F081R1_068.ab1   708 
  268    BE494474Ld07P078F02P078F081F1_068.ab1   268 
  276  C BE494474Ld07P078F02P078F081R1_068.ab1   692 
  280    BE494474Ld07P078F02P078F081F1_068.ab1   280 
  284  C BE494474Ld07P078F02P078F081R1_068.ab1   684 
  332    BE494474Ld07P078F02P078F081F1_068.ab1   332 
  336  C BE494474Ld07P078F02P078F081R1_068.ab1   632 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0