No. words: 1427; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:986)  404  2.05 0.00 0.00  BE494474Ld08P078F02P078F081F1_066.ab1       79   518 (0)  C BE494474Ld08P078F02P078F081R1_066.ab1   (0)   909   470 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    BE494474Ld08P078F02P078F081F1_066.ab1     1 
   82  C BE494474Ld08P078F02P078F081R1_066.ab1   906 
   96    BE494474Ld08P078F02P078F081F1_066.ab1    96 
  196  C BE494474Ld08P078F02P078F081R1_066.ab1   792 
  200    BE494474Ld08P078F02P078F081F1_066.ab1   200 
  224  C BE494474Ld08P078F02P078F081R1_066.ab1   764 
  228    BE494474Ld08P078F02P078F081F1_066.ab1   228 
  252  C BE494474Ld08P078F02P078F081R1_066.ab1   736 
  272    BE494474Ld08P078F02P078F081F1_066.ab1   272 
  280  C BE494474Ld08P078F02P078F081R1_066.ab1   708 
  288    BE494474Ld08P078F02P078F081F1_066.ab1   288 
  292  C BE494474Ld08P078F02P078F081R1_066.ab1   696 
Contig length: old 987, new 987

Contig length: old 987, new 987
New start: 0