No. words: 1855; after pruning: 1829


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.1 (1,1:888)  869  0.00 0.00 0.11  BE494474Sn27P116B04P078F081F1_085.ab1        1   889 (38)  C BE494474Sn27P116B04P078F081R1_085.ab1   (40)   888     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  442 nodes

 223 str. conn. components

Path
    1  C BE494474Sn27P116B04P078F081R1_085.ab1   928 
   52    BE494474Sn27P116B04P078F081F1_085.ab1    12 
   72  C BE494474Sn27P116B04P078F081R1_085.ab1   857 
   80    BE494474Sn27P116B04P078F081F1_085.ab1    40 
  336  C BE494474Sn27P116B04P078F081R1_085.ab1   593 
  376    BE494474Sn27P116B04P078F081F1_085.ab1   336 
  540  C BE494474Sn27P116B04P078F081R1_085.ab1   389 
  914    BE494474Sn27P116B04P078F081F1_085.ab1   875 
  918  C BE494474Sn27P116B04P078F081R1_085.ab1    11 
  922    BE494474Sn27P116B04P078F081F1_085.ab1   883 
Contig length: old 966, new 966

Contig length: old 966, new 967
New start: 0 
I Change at: 914; seg lengths: entry 1, contig 0