No. words: 1527; after pruning: 1487


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:838)  666  0.15 0.00 0.00  BE494474Sn29P116E04P078F081F1_094.ab1      158   839 (6)  C BE494474Sn29P116E04P078F081R1_094.ab1   (0)   682     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    BE494474Sn29P116E04P078F081F1_094.ab1     1 
  405  C BE494474Sn29P116E04P078F081R1_094.ab1   435 
  425    BE494474Sn29P116E04P078F081F1_094.ab1   425 
  469  C BE494474Sn29P116E04P078F081R1_094.ab1   371 
  517    BE494474Sn29P116E04P078F081F1_094.ab1   517 
  537  C BE494474Sn29P116E04P078F081R1_094.ab1   303 
  819    BE494474Sn29P116E04P078F081F1_094.ab1   819 
  823  C BE494474Sn29P116E04P078F081R1_094.ab1    17 
  835    BE494474Sn29P116E04P078F081F1_094.ab1   835 
Contig length: old 845, new 845

Contig length: old 845, new 845
New start: 0