No. words: 1418; after pruning: 1378


Histogram of relative pair offsets, for read pairs with multiple alignments:
 0     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
 -871  -844  0 -299    175     I -587- -413
Fail: (1)  175   -0.1 2.2 (1,1:844)  224  1.95 0.00 0.39  BE494474Ta13P116E04P078F081F1_078.ab1        1   257 (289)  C BE494474Ta13P116E04P078F081R1_078.ab1   (28)   844   589  

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       0        1

Gap   # merges  # failures
 size
175       0        1

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
 -871  -844  0 -299    175     I -587- -413
Fail: (1)  175   -0.1 2.2 (1,1:844)  224  1.95 0.00 0.39  BE494474Ta13P116E04P078F081F1_078.ab1        1   257 (289)  C BE494474Ta13P116E04P078F081R1_078.ab1   (28)   844   589  

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       0        1

Gap   # merges  # failures
 size
175       0        1

Offset
  0       1 
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 

Merge:(0)  175    0.0 4.8 (1,1:844)  224  1.95 0.00 0.39  BE494474Ta13P116E04P078F081F1_078.ab1        1   257 (289)  C BE494474Ta13P116E04P078F081R1_078.ab1   (28)   844   589  

Contig 1:  162 nodes

 83 str. conn. components

Path
    1  C BE494474Ta13P116E04P078F081R1_078.ab1   872 
   36    BE494474Ta13P116E04P078F081F1_078.ab1     8 
   72  C BE494474Ta13P116E04P078F081R1_078.ab1   801 
  108    BE494474Ta13P116E04P078F081F1_078.ab1    80 
  168  C BE494474Ta13P116E04P078F081R1_078.ab1   705 
  172    BE494474Ta13P116E04P078F081F1_078.ab1   144 
  184  C BE494474Ta13P116E04P078F081R1_078.ab1   689 
  196    BE494474Ta13P116E04P078F081F1_078.ab1   168 
  208  C BE494474Ta13P116E04P078F081R1_078.ab1   665 
Contig length: old 872, new 872

Contig length: old 872, new 872
New start: 0