No. words: 1063; after pruning: 1037


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
 -645  -636  0 -220    204     E -423- -220
Fail: (1)  204    0.0 3.0 (1,1:636)  196  0.94 0.00 0.00  BE494474Ta15P116E04P078F081F1_076.ab1        1   213 (204)  C BE494474Ta15P116E04P078F081R1_076.ab1   (9)   637   425 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
204       0        1

Offset
  0       1 

Pass 4
             Gap  Score    
 -645  -636  0 -220    204     E -423- -220
Fail: (1)  204    0.0 3.0 (1,1:636)  196  0.94 0.00 0.00  BE494474Ta15P116E04P078F081F1_076.ab1        1   213 (204)  C BE494474Ta15P116E04P078F081R1_076.ab1   (9)   637   425 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
204       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE494474Ta15P116E04P078F081R1_076.ab1     1 
Contig length: old 646, new 646

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE494474Ta15P116E04P078F081F1_076.ab1     1 
Contig length: old 417, new 417