No. words: 1523; after pruning: 1483


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.0 (1,1:845)  630  1.19 0.00 0.15  BE494474Ta19P116E04P078F081F1_072.ab1       10   683 (0)  C BE494474Ta19P116E04P078F081R1_072.ab1   (3)   837   165 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    BE494474Ta19P116E04P078F081F1_072.ab1     1 
  304  C BE494474Ta19P116E04P078F081R1_072.ab1   543 
  388    BE494474Ta19P116E04P078F081F1_072.ab1   388 
  484  C BE494474Ta19P116E04P078F081R1_072.ab1   364 
  488    BE494474Ta19P116E04P078F081F1_072.ab1   488 
  592  C BE494474Ta19P116E04P078F081R1_072.ab1   256 
  600    BE494474Ta19P116E04P078F081F1_072.ab1   600 
  616  C BE494474Ta19P116E04P078F081R1_072.ab1   232 
  624    BE494474Ta19P116E04P078F081F1_072.ab1   624 
  632  C BE494474Ta19P116E04P078F081R1_072.ab1   216 
Contig length: old 846, new 847

Contig length: old 847, new 847
New start: 0