No. words: 1674; after pruning: 1648


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:855)  782  0.25 0.00 0.00  BE494474Ta22P116B04P078F081F1_092.ab1        1   804 (0)  C BE494474Ta22P116B04P078F081R1_092.ab1   (14)   856    53 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C BE494474Ta22P116B04P078F081R1_092.ab1   870 
   18    BE494474Ta22P116B04P078F081F1_092.ab1     4 
   26  C BE494474Ta22P116B04P078F081R1_092.ab1   845 
   39    BE494474Ta22P116B04P078F081F1_092.ab1    25 
   47  C BE494474Ta22P116B04P078F081R1_092.ab1   824 
   55    BE494474Ta22P116B04P078F081F1_092.ab1    41 
   71  C BE494474Ta22P116B04P078F081R1_092.ab1   800 
   75    BE494474Ta22P116B04P078F081F1_092.ab1    61 
  211  C BE494474Ta22P116B04P078F081R1_092.ab1   660 
  219    BE494474Ta22P116B04P078F081F1_092.ab1   205 
  227  C BE494474Ta22P116B04P078F081R1_092.ab1   644 
  239    BE494474Ta22P116B04P078F081F1_092.ab1   225 
  255  C BE494474Ta22P116B04P078F081R1_092.ab1   616 
  271    BE494474Ta22P116B04P078F081F1_092.ab1   257 
  295  C BE494474Ta22P116B04P078F081R1_092.ab1   576 
  335    BE494474Ta22P116B04P078F081F1_092.ab1   321 
  343  C BE494474Ta22P116B04P078F081R1_092.ab1   528 
  347    BE494474Ta22P116B04P078F081F1_092.ab1   333 
  359  C BE494474Ta22P116B04P078F081R1_092.ab1   512 
  563    BE494474Ta22P116B04P078F081F1_092.ab1   549 
  567  C BE494474Ta22P116B04P078F081R1_092.ab1   304 
  691    BE494474Ta22P116B04P078F081F1_092.ab1   677 
  695  C BE494474Ta22P116B04P078F081R1_092.ab1   176 
Contig length: old 870, new 870

Contig length: old 870, new 870
New start: 0