No. words: 1825; after pruning: 1799


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.3 (1,1:888)  869  0.00 0.00 0.11  BE494474Td04P116B04P078F081F1_078.ab1        1   889 (32)  C BE494474Td04P116B04P078F081R1_078.ab1   (16)   888     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  442 nodes

 223 str. conn. components

Path
    1  C BE494474Td04P116B04P078F081R1_078.ab1   904 
   20    BE494474Td04P116B04P078F081F1_078.ab1     4 
  352  C BE494474Td04P116B04P078F081R1_078.ab1   553 
  356    BE494474Td04P116B04P078F081F1_078.ab1   340 
  632  C BE494474Td04P116B04P078F081R1_078.ab1   273 
  890    BE494474Td04P116B04P078F081F1_078.ab1   875 
  894  C BE494474Td04P116B04P078F081R1_078.ab1    11 
  898    BE494474Td04P116B04P078F081F1_078.ab1   883 
Contig length: old 936, new 936

Contig length: old 936, new 937
New start: 0 
I Change at: 890; seg lengths: entry 1, contig 0