No. words: 1055; after pruning: 1015


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.0 (1,1:972)   73  3.66 0.00 0.00  BE494474Tu02P078F02P078F081F1_020.ab1      439   520 (0)  C BE494474Tu02P078F02P078F081R1_020.ab1   (0)   535   454 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  36 nodes

 20 str. conn. components

Path
    1    BE494474Tu02P078F02P078F081F1_020.ab1     1 
  442  C BE494474Tu02P078F02P078F081R1_020.ab1   532 
Contig length: old 973, new 973

Contig length: old 973, new 973
New start: 0 
S Change at: 327; seg lengths: entry 1, contig 1