No. words: 1769; after pruning: 1743


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:1001)  748  0.00 0.13 0.13  BE494807Ld07P078G02P078G081F1_009.ab1      133   899 (0)  C BE494807Ld07P078G02P078G081R1_009.ab1   (0)   870   104 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1    BE494807Ld07P078G02P078G081F1_009.ab1     1 
  408  C BE494807Ld07P078G02P078G081R1_009.ab1   595 
  416    BE494807Ld07P078G02P078G081F1_009.ab1   416 
  424  C BE494807Ld07P078G02P078G081R1_009.ab1   579 
  440    BE494807Ld07P078G02P078G081F1_009.ab1   440 
  444  C BE494807Ld07P078G02P078G081R1_009.ab1   559 
  448    BE494807Ld07P078G02P078G081F1_009.ab1   448 
  452  C BE494807Ld07P078G02P078G081R1_009.ab1   551 
  484    BE494807Ld07P078G02P078G081F1_009.ab1   484 
  516  C BE494807Ld07P078G02P078G081R1_009.ab1   487 
  540    BE494807Ld07P078G02P078G081F1_009.ab1   540 
  548  C BE494807Ld07P078G02P078G081R1_009.ab1   455 
  568    BE494807Ld07P078G02P078G081F1_009.ab1   568 
  572  C BE494807Ld07P078G02P078G081R1_009.ab1   431 
Contig length: old 1002, new 1002

Contig length: old 1002, new 1002
New start: 0