No. words: 1746; after pruning: 1678


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.9 (1,1:873)  844  0.47 0.00 0.00  BE494807Ta20P137B04P078G081F1_062.ab1       15   874 (12)  C BE494807Ta20P137B04P078G081R1_062.ab1   (0)   860     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  420 nodes

 212 str. conn. components

Path
    1    BE494807Ta20P137B04P078G081F1_062.ab1     1 
  399  C BE494807Ta20P137B04P078G081R1_062.ab1   476 
  411    BE494807Ta20P137B04P078G081F1_062.ab1   411 
  458  C BE494807Ta20P137B04P078G081R1_062.ab1   417 
  586    BE494807Ta20P137B04P078G081F1_062.ab1   586 
  590  C BE494807Ta20P137B04P078G081R1_062.ab1   285 
  868    BE494807Ta20P137B04P078G081F1_062.ab1   868 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0