No. words: 1592; after pruning: 1566


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:815)  763  0.00 0.00 0.13  BE494807Td09P137B04P078G081F1_039.ab1       25   801 (0)  C BE494807Td09P137B04P078G081R1_039.ab1   (0)   791    16 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1    BE494807Td09P137B04P078G081F1_039.ab1     1 
  256  C BE494807Td09P137B04P078G081R1_039.ab1   561 
  264    BE494807Td09P137B04P078G081F1_039.ab1   264 
  292  C BE494807Td09P137B04P078G081R1_039.ab1   525 
  300    BE494807Td09P137B04P078G081F1_039.ab1   300 
  312  C BE494807Td09P137B04P078G081R1_039.ab1   505 
  320    BE494807Td09P137B04P078G081F1_039.ab1   320 
  328  C BE494807Td09P137B04P078G081R1_039.ab1   489 
  336    BE494807Td09P137B04P078G081F1_039.ab1   336 
  340  C BE494807Td09P137B04P078G081R1_039.ab1   477 
  344    BE494807Td09P137B04P078G081F1_039.ab1   344 
  348  C BE494807Td09P137B04P078G081R1_039.ab1   469 
  400    BE494807Td09P137B04P078G081F1_039.ab1   400 
  412  C BE494807Td09P137B04P078G081R1_039.ab1   405 
  416    BE494807Td09P137B04P078G081F1_039.ab1   416 
  420  C BE494807Td09P137B04P078G081R1_039.ab1   397 
  476    BE494807Td09P137B04P078G081F1_039.ab1   476 
  480  C BE494807Td09P137B04P078G081R1_039.ab1   337 
  552    BE494807Td09P137B04P078G081F1_039.ab1   552 
  556  C BE494807Td09P137B04P078G081R1_039.ab1   261 
Contig length: old 816, new 816

Contig length: old 816, new 816
New start: 0