No. words: 262; after pruning: 236


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -0.4 -0.4 (1,1:84)   72  0.00 1.20 1.20  BE494888Ta20P052G05P059B121F1_025.ab1        3    85 (40)  C BE494888Ta20P052G05P059B121R1_025.ab1   (54)    83     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  36 nodes

 20 str. conn. components

Path
    1  C BE494888Ta20P052G05P059B121R1_025.ab1   137 
   78    BE494888Ta20P052G05P059B121F1_025.ab1    25 
   86  C BE494888Ta20P052G05P059B121R1_025.ab1    52 
   98    BE494888Ta20P052G05P059B121F1_025.ab1    45 
Contig length: old 177, new 178

Contig length: old 178, new 178
New start: 0