No. words: 247; after pruning: 221


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -1.5 -1.5 (1,1:68)   60  0.00 1.49 0.00  BE494888Td05P052G05P059B121F1_007.ab1        3    69 (56)  C BE494888Td05P052G05P059B121R1_007.ab1   (54)    68     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.5       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1  C BE494888Td05P052G05P059B121R1_007.ab1   122 
   78    BE494888Td05P052G05P059B121F1_007.ab1    25 
   86  C BE494888Td05P052G05P059B121R1_007.ab1    37 
   98    BE494888Td05P052G05P059B121F1_007.ab1    45 
  114  C BE494888Td05P052G05P059B121R1_007.ab1     9 
  118    BE494888Td05P052G05P059B121F1_007.ab1    65 
Contig length: old 178, new 178

Contig length: old 178, new 178
New start: 0