No. words: 1430; after pruning: 1404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:686)  664  0.44 0.00 0.15  BE495175Ld04P078A03P078A091F1_068.ab1        1   687 (16)  C BE495175Ld04P078A03P078A091R1_068.ab1   (41)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C BE495175Ld04P078A03P078A091R1_068.ab1   727 
   45    BE495175Ld04P078A03P078A091F1_068.ab1     4 
   61  C BE495175Ld04P078A03P078A091R1_068.ab1   667 
   65    BE495175Ld04P078A03P078A091F1_068.ab1    24 
  112  C BE495175Ld04P078A03P078A091R1_068.ab1   617 
  116    BE495175Ld04P078A03P078A091F1_068.ab1    75 
  120  C BE495175Ld04P078A03P078A091R1_068.ab1   609 
  124    BE495175Ld04P078A03P078A091F1_068.ab1    83 
  440  C BE495175Ld04P078A03P078A091R1_068.ab1   289 
  640    BE495175Ld04P078A03P078A091F1_068.ab1   599 
  648  C BE495175Ld04P078A03P078A091R1_068.ab1    81 
  652    BE495175Ld04P078A03P078A091F1_068.ab1   611 
  660  C BE495175Ld04P078A03P078A091R1_068.ab1    69 
  680    BE495175Ld04P078A03P078A091F1_068.ab1   639 
  684  C BE495175Ld04P078A03P078A091R1_068.ab1    45 
  692    BE495175Ld04P078A03P078A091F1_068.ab1   651 
  696  C BE495175Ld04P078A03P078A091R1_068.ab1    33 
  720    BE495175Ld04P078A03P078A091F1_068.ab1   679 
Contig length: old 743, new 744

Contig length: old 744, new 744
New start: 0