No. words: 1260; after pruning: 1234


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.4 -0.4 (1,1:542)  386  8.67 0.55 0.00  BE495175Sn31P095H06P078A091F1_088.ab1        1   542 (116)  C BE495175Sn31P095H06P078A091R1_088.ab1   (57)   545     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C BE495175Sn31P095H06P078A091R1_088.ab1   602 
   69    BE495175Sn31P095H06P078A091F1_088.ab1    11 
   81  C BE495175Sn31P095H06P078A091R1_088.ab1   522 
  101    BE495175Sn31P095H06P078A091F1_088.ab1    42 
  114  C BE495175Sn31P095H06P078A091R1_088.ab1   489 
  118    BE495175Sn31P095H06P078A091F1_088.ab1    59 
  122  C BE495175Sn31P095H06P078A091R1_088.ab1   481 
  172    BE495175Sn31P095H06P078A091F1_088.ab1   113 
  180  C BE495175Sn31P095H06P078A091R1_088.ab1   423 
  184    BE495175Sn31P095H06P078A091F1_088.ab1   125 
  188  C BE495175Sn31P095H06P078A091R1_088.ab1   415 
  216    BE495175Sn31P095H06P078A091F1_088.ab1   157 
  230  C BE495175Sn31P095H06P078A091R1_088.ab1   373 
  251    BE495175Sn31P095H06P078A091F1_088.ab1   192 
  261  C BE495175Sn31P095H06P078A091R1_088.ab1   342 
  278    BE495175Sn31P095H06P078A091F1_088.ab1   219 
  312  C BE495175Sn31P095H06P078A091R1_088.ab1   291 
  316    BE495175Sn31P095H06P078A091F1_088.ab1   257 
  356  C BE495175Sn31P095H06P078A091R1_088.ab1   247 
  382    BE495175Sn31P095H06P078A091F1_088.ab1   323 
  411  C BE495175Sn31P095H06P078A091R1_088.ab1   191 
  419    BE495175Sn31P095H06P078A091F1_088.ab1   360 
  427  C BE495175Sn31P095H06P078A091R1_088.ab1   175 
  431    BE495175Sn31P095H06P078A091F1_088.ab1   372 
  435  C BE495175Sn31P095H06P078A091R1_088.ab1   167 
  439    BE495175Sn31P095H06P078A091F1_088.ab1   380 
  471  C BE495175Sn31P095H06P078A091R1_088.ab1   131 
  475    BE495175Sn31P095H06P078A091F1_088.ab1   416 
  491  C BE495175Sn31P095H06P078A091R1_088.ab1   111 
  495    BE495175Sn31P095H06P078A091F1_088.ab1   436 
  534  C BE495175Sn31P095H06P078A091R1_088.ab1    68 
  538    BE495175Sn31P095H06P078A091F1_088.ab1   479 
Contig length: old 717, new 717

Contig length: old 717, new 717
New start: 0 
S Change at: 192; seg lengths: entry 1, contig 1
S Change at: 293; seg lengths: entry 1, contig 1
S Change at: 328; seg lengths: entry 1, contig 1