No. words: 1334; after pruning: 1308


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   15    0.0 5.3 (1,1:627)  499  4.40 0.49 0.49  BE495175Td08P095H06P078A091F1_074.ab1       16   628 (41)  C BE495175Td08P095H06P078A091R1_074.ab1   (52)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
15       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE495175Td08P095H06P078A091R1_074.ab1   665 
   59    BE495175Td08P095H06P078A091F1_074.ab1    22 
  107  C BE495175Td08P095H06P078A091R1_074.ab1   559 
  119    BE495175Td08P095H06P078A091F1_074.ab1    82 
  131  C BE495175Td08P095H06P078A091R1_074.ab1   535 
  139    BE495175Td08P095H06P078A091F1_074.ab1   102 
  143  C BE495175Td08P095H06P078A091R1_074.ab1   523 
  147    BE495175Td08P095H06P078A091F1_074.ab1   110 
  503  C BE495175Td08P095H06P078A091R1_074.ab1   162 
  511    BE495175Td08P095H06P078A091F1_074.ab1   474 
  535  C BE495175Td08P095H06P078A091R1_074.ab1   130 
  567    BE495175Td08P095H06P078A091F1_074.ab1   530 
  583  C BE495175Td08P095H06P078A091R1_074.ab1    82 
  599    BE495175Td08P095H06P078A091F1_074.ab1   562 
  615  C BE495175Td08P095H06P078A091R1_074.ab1    50 
  623    BE495175Td08P095H06P078A091F1_074.ab1   586 
  639  C BE495175Td08P095H06P078A091R1_074.ab1    26 
  643    BE495175Td08P095H06P078A091F1_074.ab1   606 
Contig length: old 706, new 706

Contig length: old 706, new 706
New start: 0