No. words: 1372; after pruning: 1332


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:699)  661  0.15 0.00 0.00  BE495175Tu01P078A03P078A091F1_034.ab1       20   691 (0)  C BE495175Tu01P078A03P078A091R1_034.ab1   (0)   681    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1    BE495175Tu01P078A03P078A091F1_034.ab1     1 
   85  C BE495175Tu01P078A03P078A091R1_034.ab1   616 
   89    BE495175Tu01P078A03P078A091F1_034.ab1    89 
  109  C BE495175Tu01P078A03P078A091R1_034.ab1   592 
  113    BE495175Tu01P078A03P078A091F1_034.ab1   113 
  125  C BE495175Tu01P078A03P078A091R1_034.ab1   576 
  129    BE495175Tu01P078A03P078A091F1_034.ab1   129 
  189  C BE495175Tu01P078A03P078A091R1_034.ab1   512 
  205    BE495175Tu01P078A03P078A091F1_034.ab1   205 
  221  C BE495175Tu01P078A03P078A091R1_034.ab1   480 
  225    BE495175Tu01P078A03P078A091F1_034.ab1   225 
  229  C BE495175Tu01P078A03P078A091R1_034.ab1   472 
  233    BE495175Tu01P078A03P078A091F1_034.ab1   233 
  237  C BE495175Tu01P078A03P078A091R1_034.ab1   464 
  245    BE495175Tu01P078A03P078A091F1_034.ab1   245 
  257  C BE495175Tu01P078A03P078A091R1_034.ab1   444 
  285    BE495175Tu01P078A03P078A091F1_034.ab1   285 
  289  C BE495175Tu01P078A03P078A091R1_034.ab1   412 
  293    BE495175Tu01P078A03P078A091F1_034.ab1   293 
  297  C BE495175Tu01P078A03P078A091R1_034.ab1   404 
  413    BE495175Tu01P078A03P078A091F1_034.ab1   413 
  429  C BE495175Tu01P078A03P078A091R1_034.ab1   272 
  453    BE495175Tu01P078A03P078A091F1_034.ab1   453 
  457  C BE495175Tu01P078A03P078A091R1_034.ab1   244 
  493    BE495175Tu01P078A03P078A091F1_034.ab1   493 
  497  C BE495175Tu01P078A03P078A091R1_034.ab1   204 
Contig length: old 700, new 700

Contig length: old 700, new 700
New start: 0