No. words: 1324; after pruning: 1298


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:694)  615  0.32 0.00 0.00  BE495175Tu02P078A03P078A091F1_063.ab1       13   641 (0)  C BE495175Tu02P078A03P078A091R1_063.ab1   (0)   683    55 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1    BE495175Tu02P078A03P078A091F1_063.ab1     1 
   32  C BE495175Tu02P078A03P078A091R1_063.ab1   664 
   48    BE495175Tu02P078A03P078A091F1_063.ab1    48 
   76  C BE495175Tu02P078A03P078A091R1_063.ab1   620 
   84    BE495175Tu02P078A03P078A091F1_063.ab1    84 
  100  C BE495175Tu02P078A03P078A091R1_063.ab1   596 
  104    BE495175Tu02P078A03P078A091F1_063.ab1   104 
  304  C BE495175Tu02P078A03P078A091R1_063.ab1   392 
  312    BE495175Tu02P078A03P078A091F1_063.ab1   312 
  364  C BE495175Tu02P078A03P078A091R1_063.ab1   332 
  372    BE495175Tu02P078A03P078A091F1_063.ab1   372 
  400  C BE495175Tu02P078A03P078A091R1_063.ab1   296 
  404    BE495175Tu02P078A03P078A091F1_063.ab1   404 
  424  C BE495175Tu02P078A03P078A091R1_063.ab1   272 
  428    BE495175Tu02P078A03P078A091F1_063.ab1   428 
  432  C BE495175Tu02P078A03P078A091R1_063.ab1   264 
  472    BE495175Tu02P078A03P078A091F1_063.ab1   472 
  476  C BE495175Tu02P078A03P078A091R1_063.ab1   220 
  484    BE495175Tu02P078A03P078A091F1_063.ab1   484 
  492  C BE495175Tu02P078A03P078A091R1_063.ab1   204 
  504    BE495175Tu02P078A03P078A091F1_063.ab1   504 
  508  C BE495175Tu02P078A03P078A091R1_063.ab1   188 
  548    BE495175Tu02P078A03P078A091F1_063.ab1   548 
  556  C BE495175Tu02P078A03P078A091R1_063.ab1   140 
Contig length: old 695, new 695

Contig length: old 695, new 695
New start: 0