No. words: 1508; after pruning: 1469


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:363)  353  0.00 0.27 0.00  BE495304Ld09P016E05E11F1_004.scf        1   364 (134)  C BE495304Ld09P016E05E11R1_004.ab1   (147)   365     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1  C BE495304Ld09P016E05E11R1_004.ab1   512 
  151    BE495304Ld09P016E05E11F1_004.scf     4 
  159  C BE495304Ld09P016E05E11R1_004.ab1   354 
  169    BE495304Ld09P016E05E11F1_004.scf    21 
Contig length: old 646, new 646

Contig length: old 646, new 646
New start: 0